feat: the shapes of the four hand-written .wikitool-*.json files live in one record each (config_shapes.py); loaders, doctor and docs/reference/configuration.md read them (#193)

The telemetry, remotes, upload and tasks loaders take field names, defaults, coercions and their Expected: text from the record and accept exactly what they did before. doctor WARNs on a telemetry file the policy silently reads differently. configuration.md carries one generated region per file, also checked in an instance. docs reference --apply now refreshes several regions in one page in sequence instead of keeping only the last.

Files changed:
- CHANGES.md
- VERSION
- docs/how-to/set-up-the-mcp-server.md
- docs/reference/README.md
- docs/reference/commands/instance-health.md
- docs/reference/commands/types-instructions-and-docs.md
- docs/reference/configuration.md
- instructions/dev/doc-pull-through.md
- instructions/setup-instance.md
- tools/CONTRACT.md
- tools/README.md
- tools/chemenu/commands/docs_verify.py
- tools/chemenu/commands/doctor.py
- tools/chemenu/commands/git_publish.py
- tools/chemenu/config.py
- tools/chemenu/config_shapes.py
- tools/chemenu/reference_doc.py
- tools/chemenu/tasks/caldav.py
- tools/chemenu/tasks/config.py
- tools/chemenu/tasks/superproductivity.py
- tools/chemenu/telemetry/policy.py
- tools/chemenu/tests/test_config_shapes.py
- tools/chemenu/tests/test_doctor.py
- tools/chemenu/tests/test_reference_doc.py
- tools/chemenu/upload.py

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2

instructions/setup-instance.md

@@ -281,8 +281,9 @@ one it needs before that.
    { "enabled": true }
    ```
 
-   `max_session_bytes` (default 5 MiB) and `keep_sessions` (default 250) are optional in the
-   same file; most instances need not touch them. If no, do nothing - the default is already
+   The file's two optional caps and their defaults are in
+   [docs/reference/configuration.md](../docs/reference/configuration.md#telemetry); most instances
+   need not touch them. If no, do nothing - the default is already
    off, and no file is created. `WIKI_TRACE` still overrides in both directions, should a
    single session need to differ.