Files changed: - .claude/settings.json - .gitea/workflows/ci.yml - .gitea/workflows/nightly.yml - .gitea/workflows/release.yml - .gitea/workflows/tracker-live.yml - .github/hooks/wiki-trace.json - .gitignore - .vibe/hooks.toml - AGENTS.md - CHANGES.md - EVALS.md - INSTALL.md - README.md - VERSION - instructions/bootstrap.md - instructions/preflight.md - instructions/setup-instance.md - instructions/upgrade-instance.md - tools/CONTRACT.md - tools/README.md - tools/chemenu/cli.py - tools/chemenu/commands/dist_cmd.py - tools/chemenu/commands/docs_verify.py - tools/chemenu/commands/doctor.py - tools/chemenu/commands/git_publish.py - tools/chemenu/commands/migrate_cmd.py - tools/chemenu/config.py - tools/chemenu/corpus_cache.py - tools/chemenu/prerequisites.py - tools/chemenu/search/ripgrep.py - tools/chemenu/tests/conftest.py - tools/chemenu/tests/test_dist_upgrade.py - tools/chemenu/tests/test_doctor.py - tools/chemenu/tests/test_preflight.py - tools/chemenu/toolpaths.py - tools/preflight.sh - tools/prerequisites.txt - tools/run_wikitool.py - tools/trace-hook - tools/wikitool