Every settings field declares its tier; a value in the wrong file is an error naming
file, key and tier. A field naming a program or affecting a gate cannot be declared
instance. Secrets are references only: {"ref": "<name>"} via WIKITOOL_SECRET_<NAME> or
a user-only secrets file, {"ref": "op://..."} via op read (locked 1Password: exit 42).
The preflight records op as an optional tool. doctor gains one line per tier, docs
verify checks a committed wikitool.json for plaintext secrets, CI resolves a real
op:// value through 1password/load-secrets-action. No feature reads its settings
this way yet; without the two files every other command is unchanged.
Files changed:
- .gitea/workflows/ci.yml
- .gitignore
- AGENTS.md
- CHANGES.md
- INSTALL.md
- VERSION
- docs/explanation/README.md
- docs/explanation/configuration-tiers.md
- docs/how-to/README.md
- docs/how-to/use-1password-for-settings.md
- docs/reference/commands/README.md
- docs/reference/commands/configuration.md
- docs/reference/commands/instance-health.md
- docs/reference/commands/types-instructions-and-docs.md
- docs/reference/configuration.md
- docs/reference/exit-codes.md
- instructions/dev/doc-pull-through.md
- instructions/dev/testing-conventions.md
- instructions/preflight.md
- tools/CONTRACT.md
- tools/README.md
- tools/chemenu/cli.py
- tools/chemenu/cli_contract.py
- tools/chemenu/commands/_util.py
- tools/chemenu/commands/config_cmd.py
- tools/chemenu/commands/docs_verify.py
- tools/chemenu/commands/doctor.py
- tools/chemenu/config.py
- tools/chemenu/config_shapes.py
- tools/chemenu/prerequisites.py
- tools/chemenu/settings.py
- tools/chemenu/tests/conftest.py
- tools/chemenu/tests/test_dist_cmd.py
- tools/chemenu/tests/test_preflight.py
- tools/chemenu/tests/test_preflight_pwsh.py
- tools/chemenu/tests/test_settings.py
- tools/chemenu/toolpaths.py
- tools/preflight.ps1
- tools/preflight.sh
- tools/prerequisites.txt
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
A mail's text is its plain text unless that is under 10% of the HTML text, then the HTML text
with a warning; one rule for .eml and .msg. The other version of the text in a
multipart/alternative is no longer an attachment.
Files changed:
- CHANGES.md
- VERSION
- docs/reference/commands/raw-material-and-uploads.md
- testfiles/mail/gog-roundcube.eml.expect
- tools/CONTRACT.md
- tools/chemenu/commands/raw_cmd.py
- tools/chemenu/filters/mail.py
- tools/chemenu/filters/msg.py
- tools/chemenu/tests/test_raw_derive.py
- tools/chemenu/tests/test_raw_derive_binary.py
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
Adds the nineteen real documents under testfiles/ (mail, Office, PDF, ZIP) with short ASCII names. Recipient addresses, names, host names, mailbox identifiers and recipient-bound tokens are replaced by filler of the same length, and the archive is rebuilt from the sanitized members. test_raw_derive_testfiles.py now compares the sheet TSVs too (with a direct test on _texts()), and a real workbook carries a formula needle that only a .formulas.tsv holds. testfiles/README.md gains the provenance table and the two new rules.
Files changed:
- CHANGES.md
- VERSION
- testfiles/README.md
- testfiles/mail/github-outlook.msg
- testfiles/mail/github-roundcube.eml
- testfiles/mail/gog-outlook.msg
- testfiles/mail/gog-roundcube.eml
- testfiles/mail/tldr-outlook.msg
- testfiles/mail/tldr-roundcube.eml
- testfiles/office/excel-artificial.xlsx
- testfiles/office/excel-business.xlsx
- testfiles/office/excel-business.xlsx.expect
- testfiles/office/excel-science.xlsx
- testfiles/office/pptx-baseline.pptx
- testfiles/office/pptx-master.pptx
- testfiles/office/pptx-objects.pptx
- testfiles/office/word-complex.docx
- testfiles/office/word-simple.docx
- testfiles/pdf/einstein-dissertation.pdf
- testfiles/pdf/ifg.pdf
- testfiles/pdf/nist-ai-rmf.pdf
- testfiles/pdf/nist-ssdf-genai.pdf
- testfiles/zip/archive.zip
- tools/chemenu/tests/test_raw_derive_testfiles.py
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
Each sheet becomes NN-<sheet>.tsv (RFC 4180, tab-delimited, A1-aligned) in a
<stem>.sheets/ folder beside the .md; sheets with formulas also get a
.formulas.tsv. derived.md is the overview. Adds testfiles/ with a CI test.
Files changed:
- .gitattributes
- CHANGES.md
- VERSION
- docs/dev/development.md
- docs/how-to/ingest-a-source.md
- docs/reference/commands/raw-material-and-uploads.md
- raw/CONTRACT.md
- testfiles/README.md
- tools/CONTRACT.md
- tools/chemenu/commands/raw_cmd.py
- tools/chemenu/filters/__init__.py
- tools/chemenu/filters/archive.py
- tools/chemenu/filters/ooxml.py
- tools/chemenu/tests/test_raw_derive.py
- tools/chemenu/tests/test_raw_derive_testfiles.py
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
A derived PDF is a folder since raw derive; the raw/CONTRACT.md example was
adapted when the command shipped, the raw pending record and its generated
copies were not.
Files changed:
- CHANGES.md
- VERSION
- docs/reference/commands/raw-material-and-uploads.md
- tools/CONTRACT.md
- tools/chemenu/commands/raw_cmd.py
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
PDF is read with pypdf (page markers, scan warning, encrypted files refused), Outlook .msg with olefile as a container like an .eml, and a .msg attached to a mail is quoted. Both packages are in tools/requirements.txt and imported only when such a file is derived, so a missing one stops that format alone. doctor reports one import-filter line per package-backed format.
Files changed:
- CHANGES.md
- VERSION
- docs/how-to/ingest-a-source.md
- docs/reference/commands/instance-health.md
- docs/reference/commands/raw-material-and-uploads.md
- tools/CONTRACT.md
- tools/README.md
- tools/chemenu/commands/doctor.py
- tools/chemenu/commands/raw_cmd.py
- tools/chemenu/filters/__init__.py
- tools/chemenu/filters/mail.py
- tools/chemenu/filters/msg.py
- tools/chemenu/filters/pdf.py
- tools/chemenu/tests/binary_formats.py
- tools/chemenu/tests/test_raw_derive_binary.py
- tools/requirements.txt
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
A ZIP becomes incoming/<stem>/ with its files and a derived text beside each
document, the ZIP is removed and its sha256 named in the output. A mail with
attachments becomes a folder with original.eml, derived.md and the attachments;
a ZIP attached to a mail is unpacked once, an attached mail is quoted. Unsafe
entries, nested ZIPs and size limits are refused before anything is written.
Files changed:
- CHANGES.md
- VERSION
- docs/how-to/ingest-a-source.md
- docs/reference/commands/README.md
- docs/reference/commands/raw-material-and-uploads.md
- raw/CONTRACT.md
- tools/CONTRACT.md
- tools/README.md
- tools/chemenu/commands/raw_cmd.py
- tools/chemenu/filters/__init__.py
- tools/chemenu/filters/archive.py
- tools/chemenu/filters/mail.py
- tools/chemenu/tests/test_portability.py
- tools/chemenu/tests/test_raw_derive.py
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
Adds the import-filter registry (tools/chemenu/filters), the raw derive command with folder form,
path-budget and name checks, DOCX/PPTX/XLSX and EML filters, the pending and accept hints, the
wiki-ingest skill step and the raw/CONTRACT.md section. First of three cuts; containers and
PDF/MSG follow.
Files changed:
- CHANGES.md
- VERSION
- docs/how-to/ingest-a-source.md
- docs/reference/commands/README.md
- docs/reference/commands/raw-material-and-uploads.md
- instructions/wiki-ingest/SKILL.md
- raw/CONTRACT.md
- tools/CONTRACT.md
- tools/README.md
- tools/chemenu/cli_contract.py
- tools/chemenu/commands/raw_cmd.py
- tools/chemenu/filters/__init__.py
- tools/chemenu/filters/html_page.py
- tools/chemenu/filters/mail.py
- tools/chemenu/filters/ooxml.py
- tools/chemenu/tests/test_raw_derive.py
- tools/chemenu/web_capture.py
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
The job token got HTTP 403 creating the first wiki page: Gitea gives the wiki its own
permission scope, which contents: write does not cover.
Files changed:
- .gitea/scripts/wiki-push.sh
- .gitea/workflows/release.yml
- .gitea/workflows/wiki-mirror.yml
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
The guide said a required migration is simply carried out, which
contradicts upgrade-instance.md: the agent can stop after the first
publish, leaving a valid intermediate state that migrate status resumes
and doctor warns about. The guide now says so without retelling the
instruction's steps.
Files changed:
- docs/how-to/update-an-instance.md
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
tools/README.md still said the asset unpacks into <script folder>/chemenu and
refuses an existing target, which stopped being true before #197; it now also
describes the retry and the rollback #197 added.
Files changed:
- CHANGES.md
- VERSION
- tools/README.md
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
A part of the stack that will not move from the unpack folder into place is
retried for about 30 seconds; each retry removes what reached the target and
unpacks the entry afresh from the archive, so the entry ends up there once and
whole. If it still fails, both scripts take back everything they moved and exit 1
with the system's message and "nothing was installed". New test hook
CHEMENU_PREFLIGHT_MOVE_FAIL=<entry>:<n>[:partial].
Files changed:
- CHANGES.md
- INSTALL.md
- VERSION
- instructions/preflight.md
- tools/CONTRACT.md
- tools/chemenu/tests/conftest.py
- tools/chemenu/tests/test_preflight.py
- tools/chemenu/tests/test_preflight_pwsh.py
- tools/preflight.ps1
- tools/preflight.sh
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
The help and exit-42 cause texts still said "rebase-review gate" after the display
name was settled; the generated reference and CONTRACT row follow.
Files changed:
- CHANGES.md
- VERSION
- docs/reference/commands/git.md
- docs/reference/exit-codes.md
- tools/CONTRACT.md
- tools/chemenu/commands/git_publish.py
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
The gate list contradicted itself across AGENTS.md, instructions/gates.md and the
command records' gate names. The Rebase-Review Gate is now listed, `new project`'s
exit 42 is no longer a pseudo-gate, gates.md and the explanation page link to the one
list instead of counting, and a register plus a docs verify check keep the three in step.
Files changed:
- AGENTS.md
- CHANGES.md
- VERSION
- docs/explanation/why-gates-are-code.md
- docs/reference/commands/pages.md
- docs/reference/commands/types-instructions-and-docs.md
- docs/reference/exit-codes.md
- instructions/gates.md
- tools/CONTRACT.md
- tools/chemenu/cli_contract.py
- tools/chemenu/commands/docs_verify.py
- tools/chemenu/commands/doctor.py
- tools/chemenu/commands/git_publish.py
- tools/chemenu/commands/new_page.py
- tools/chemenu/errors.py
- tools/chemenu/mcp/server.py
- tools/chemenu/tests/test_cli_contract.py
- tools/chemenu/tests/test_docs_verify.py
- tools/chemenu/tests/test_git_publish.py
- tools/chemenu/tests/test_reference_doc.py
Co-Authored-By: Claude Code <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
The telemetry, remotes, upload and tasks loaders take field names, defaults, coercions and their Expected: text from the record and accept exactly what they did before. doctor WARNs on a telemetry file the policy silently reads differently. configuration.md carries one generated region per file, also checked in an instance. docs reference --apply now refreshes several regions in one page in sequence instead of keeping only the last.
Files changed:
- CHANGES.md
- VERSION
- docs/how-to/set-up-the-mcp-server.md
- docs/reference/README.md
- docs/reference/commands/instance-health.md
- docs/reference/commands/types-instructions-and-docs.md
- docs/reference/configuration.md
- instructions/dev/doc-pull-through.md
- instructions/setup-instance.md
- tools/CONTRACT.md
- tools/README.md
- tools/chemenu/commands/docs_verify.py
- tools/chemenu/commands/doctor.py
- tools/chemenu/commands/git_publish.py
- tools/chemenu/config.py
- tools/chemenu/config_shapes.py
- tools/chemenu/reference_doc.py
- tools/chemenu/tasks/caldav.py
- tools/chemenu/tasks/config.py
- tools/chemenu/tasks/superproductivity.py
- tools/chemenu/telemetry/policy.py
- tools/chemenu/tests/test_config_shapes.py
- tools/chemenu/tests/test_doctor.py
- tools/chemenu/tests/test_reference_doc.py
- tools/chemenu/upload.py
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SnAJ7Z3CpVD3PRbN73QtU2
torben
